Variant report

Variant	rs16849468
Chromosome Location	chr3:139557919-139557920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1426047	1.00[AMR][1000 genomes]
rs16849551	1.00[AMR][1000 genomes]
rs16849604	1.00[AMR][1000 genomes]
rs61106304	1.00[AMR][1000 genomes]
rs7638844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139553200-139558800	Enhancers	Pancreas	Pancrea
2	chr3:139554600-139558800	Enhancers	Fetal Brain Male	brain
3	chr3:139555000-139558000	Enhancers	Psoas Muscle	Psoas
4	chr3:139556000-139559000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:139556400-139559000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:139556800-139558000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:139557000-139558000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:139557000-139558000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:139557000-139558000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:139557000-139558000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:139557000-139558400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:139557200-139558000	Enhancers	Liver	Liver
13	chr3:139557200-139558200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:139557200-139558600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:139557400-139558000	Enhancers	Right Atrium	heart
16	chr3:139557400-139559000	Enhancers	Adipose Nuclei	Adipose
17	chr3:139557800-139558200	Enhancers	Fetal Brain Female	brain
18	chr3:139557800-139558600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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