Variant report

Variant	rs16849506
Chromosome Location	chr4:74363712-74363713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1247684	1.00[AMR][1000 genomes]
rs16849294	1.00[AMR][1000 genomes]
rs16849521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41386245	1.00[AMR][1000 genomes]
rs41494947	1.00[AMR][1000 genomes]
rs56043949	1.00[AMR][1000 genomes]
rs59078835	1.00[AMR][1000 genomes]
rs72865471	1.00[AMR][1000 genomes]
rs72865474	1.00[AMR][1000 genomes]
rs72865476	1.00[AMR][1000 genomes]
rs72865480	1.00[AMR][1000 genomes]
rs72865485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74353000-74364800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:74354000-74365600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74361800-74371800	Genic enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links