Variant report

Variant	rs16849879
Chromosome Location	chr4:74583661-74583662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12108656	0.91[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849877	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16849881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849886	1.00[AMR][1000 genomes]
rs16849893	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951701	0.88[AFR][1000 genomes]
rs4694634	1.00[MEX][hapmap]
rs7678307	0.91[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74574600-74583800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:74578400-74584000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:74580200-74584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:74580200-74584200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:74580200-74584400	Weak transcription	HMEC	breast
6	chr4:74580200-74587200	Weak transcription	NHEK	skin
7	chr4:74581600-74589400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:74581800-74584600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:74581800-74588600	Weak transcription	K562	blood
10	chr4:74582000-74583800	Weak transcription	Hela-S3	cervix
11	chr4:74582600-74583800	Weak transcription	Dnd41	blood
12	chr4:74583200-74584000	Enhancers	GM12878-XiMat	blood
13	chr4:74583200-74585000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:74583600-74584800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:74583600-74585000	Enhancers	HSMM	muscle
16	chr4:74583600-74585400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:74583600-74585600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:74583600-74588000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:74583600-74589200	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links