Variant report

Variant	rs16850008
Chromosome Location	chr4:74628117-74628118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11940656	0.83[AMR][1000 genomes]
rs11944402	0.83[AMR][1000 genomes]
rs1957074	0.81[LWK][hapmap];0.88[MKK][hapmap];0.83[AMR][1000 genomes]
rs2208468	1.00[AMR][1000 genomes]
rs2227538	0.82[LWK][hapmap]
rs41343544	0.83[AMR][1000 genomes]
rs57596152	0.83[AMR][1000 genomes]
rs6446956	0.83[AMR][1000 genomes]
rs6446957	0.83[AMR][1000 genomes]
rs72853821	1.00[AMR][1000 genomes]
rs72867182	1.00[AMR][1000 genomes]
rs7699027	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74625200-74629400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:74626400-74628400	Enhancers	K562	blood
3	chr4:74627200-74628200	Weak transcription	Primary B cells from cord blood	blood
4	chr4:74627600-74628600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:74627600-74629200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:74627800-74628600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:74628000-74628200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:74628000-74628600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr4:74628000-74628600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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