Variant report

Variant	rs16851341
Chromosome Location	chr3:141040055-141040056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr3:141039852-141040383	HCT-116	colon:	n/a	n/a
2	JUND	chr3:141039832-141040425	HCT-116	colon:	n/a	n/a
3	JUND	chr3:141040028-141040277	K562	blood:	n/a	n/a
4	FOS	chr3:141039720-141040376	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:141034601..141036364-chr3:141038270..141040107,2	K562	blood:
2	chr3:141038218..141041053-chr3:141044225..141046935,2	K562	blood:
3	chr3:141039246..141041053-chr3:141044683..141046935,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2102557	1.00[CEU][hapmap];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
2	chr3:141039000-141041000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:141039000-141041200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:141039000-141041400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:141039200-141040200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr3:141039200-141040400	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:141039200-141040800	Enhancers	Primary T cells from cord blood	blood
8	chr3:141039200-141041000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:141039200-141041000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:141039200-141041000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:141039200-141041200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:141039400-141040800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:141039400-141040800	Enhancers	HUVEC	blood vessel
14	chr3:141039600-141040200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:141039600-141040200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:141039600-141040200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:141039600-141040200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:141039600-141040200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:141039600-141040200	Enhancers	Lung	lung
20	chr3:141039600-141040200	Enhancers	Dnd41	blood
21	chr3:141039600-141040400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr3:141039600-141040400	Enhancers	NH-A	brain
23	chr3:141039600-141040600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:141039600-141040600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:141039600-141040600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:141039600-141040600	Enhancers	Hela-S3	cervix
27	chr3:141039600-141040600	Enhancers	HMEC	breast
28	chr3:141039600-141041400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:141039600-141042800	Enhancers	Fetal Intestine Large	intestine
30	chr3:141039800-141040200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:141039800-141040200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:141039800-141040400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:141039800-141040600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:141039800-141040600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:141039800-141040600	Enhancers	HSMM	muscle
36	chr3:141039800-141040600	Enhancers	NHDF-Ad	bronchial
37	chr3:141039800-141042000	Weak transcription	HepG2	liver
38	chr3:141039800-141042800	Enhancers	Fetal Intestine Small	intestine
39	chr3:141040000-141040200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:141040000-141040400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:141040000-141040400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr3:141040000-141040400	Flanking Active TSS	A549	lung
43	chr3:141040000-141040400	Enhancers	GM12878-XiMat	blood
44	chr3:141040000-141040400	Enhancers	NHEK	skin
45	chr3:141040000-141040600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:141040000-141040600	Enhancers	HSMMtube	muscle
47	chr3:141040000-141040600	Enhancers	NHLF	lung
48	chr3:141040000-141040600	Enhancers	Osteobl	bone
49	chr3:141040000-141041000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr3:141040000-141041200	Enhancers	Small Intestine	intestine

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