Variant report

Variant	rs16851689
Chromosome Location	chr3:141429409-141429410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11542226	1.00[JPT][hapmap]
rs16851691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap]
rs16851704	0.81[GIH][hapmap]
rs17787772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4586785	1.00[JPT][hapmap]
rs4588340	1.00[JPT][hapmap]
rs7643689	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141416400-141429800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141425400-141433000	Enhancers	HUVEC	blood vessel
3	chr3:141426200-141431800	Enhancers	Placenta	Placenta
4	chr3:141427000-141429600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:141427200-141429600	Weak transcription	HMEC	breast
6	chr3:141427200-141429600	Weak transcription	NHLF	lung
7	chr3:141427200-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141427200-141430000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:141427400-141429600	Weak transcription	Osteobl	bone
10	chr3:141427400-141429800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:141427400-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:141427400-141429800	Weak transcription	HSMM	muscle
13	chr3:141427600-141429600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:141427600-141429600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:141427600-141429600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:141427600-141429600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:141427600-141429600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:141427600-141429600	Weak transcription	NH-A	brain
19	chr3:141427600-141429800	Weak transcription	HSMMtube	muscle
20	chr3:141428800-141429800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:141429000-141430000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:141429400-141430400	Enhancers	HepG2	liver
23	chr3:141429400-141430800	Enhancers	NHDF-Ad	bronchial

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