Variant report

Variant	rs16851692
Chromosome Location	chr3:141438582-141438583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16851763	0.86[EUR][1000 genomes]
rs1879286	1.00[EUR][1000 genomes]
rs59077856	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59379866	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59538463	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73226649	0.92[ASN][1000 genomes]
rs954277	0.92[ASN][1000 genomes]
rs9790069	1.00[EUR][1000 genomes]
rs9790073	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141438000-141439200	Enhancers	Placenta	Placenta
2	chr3:141438200-141438600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:141438400-141438600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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