Variant report

Variant	rs16853933
Chromosome Location	chr2:168464564-168464565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1019894	0.89[AMR][1000 genomes]
rs1227141	0.89[AMR][1000 genomes]
rs1234893	0.89[AMR][1000 genomes]
rs1431904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1653387	0.84[EUR][1000 genomes]
rs1653413	1.00[EUR][1000 genomes]
rs2464040	0.87[AFR][1000 genomes]
rs6726860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv583594	chr2:168461161-168597986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168462400-168464600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:168463400-168464600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:168463800-168464600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:168463800-168464600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:168463800-168464600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:168463800-168464600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:168464000-168464600	Enhancers	Brain Germinal Matrix	brain
8	chr2:168464200-168476600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links