Variant report

Variant	rs16854193
Chromosome Location	chr3:143437485-143437486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10513220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854158	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16854165	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854171	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16854196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1868181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3411176	chr3:143423880-143457059	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1012559	chr3:143424787-143444900	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143427400-143444600	Weak transcription	Esophagus	oesophagus
3	chr3:143435200-143441000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:143436000-143445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143436200-143442800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:143437200-143437600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:143437400-143437800	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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