Variant report

Variant	rs16854304
Chromosome Location	chr1:179518459-179518460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12749461	0.80[YRI][hapmap]
rs13306733	0.91[CHB][hapmap]
rs16854264	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16854276	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16854300	1.00[ASW][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2274621	0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68054120	1.00[ASN][1000 genomes]
rs73035970	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv523253	chr1:179516072-179518459	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179515600-179521800	Enhancers	Placenta	Placenta
3	chr1:179516800-179519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:179516800-179520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:179517800-179518600	Enhancers	Gastric	stomach
6	chr1:179518200-179519000	Weak transcription	Pancreas	Pancrea
7	chr1:179518400-179519000	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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