Variant report

Variant	rs16854337
Chromosome Location	chr1:179520715-179520716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:179519934-179520847	MCF10A-Er-Src	breast:	n/a	n/a
2	EBF1	chr1:179520397-179520788	GM12878	blood:	n/a	n/a
3	EP300	chr1:179520545-179520757	GM12878	blood:	n/a	n/a
4	MYC	chr1:179520508-179520814	MCF10A-Er-Src	breast:	n/a	n/a
5	BHLHE40	chr1:179520528-179520760	GM12878	blood:	n/a	n/a
6	FOS	chr1:179519967-179520871	MCF10A-Er-Src	breast:	n/a	n/a
7	MAFK	chr1:179520507-179520817	H1-hESC	embryonic stem cell:	n/a	n/a
8	FOS	chr1:179519924-179520833	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr1:179519936-179520830	MCF10A-Er-Src	breast:	n/a	n/a
10	CREB1	chr1:179520379-179520756	GM12878	blood:	n/a	n/a
11	IKZF1	chr1:179520552-179520778	GM12878	blood:	n/a	n/a
12	MAFK	chr1:179520495-179520840	K562	blood:	n/a	n/a
13	STAT3	chr1:179519828-179520802	MCF10A-Er-Src	breast:	n/a	n/a
14	MAFK	chr1:179520523-179520737	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr1:179520492-179520796	Hela-S3	cervix:	n/a	n/a
16	PAX5	chr1:179520328-179520758	GM12878	blood:	n/a	n/a
17	CEBPB	chr1:179520507-179520839	IMR90	lung:	n/a	n/a
18	EBF1	chr1:179520370-179520835	GM12878	blood:	n/a	n/a
19	EBF1	chr1:179520422-179520731	GM12878	blood:	n/a	n/a
20	JUN	chr1:179520433-179520824	K562	blood:	n/a	n/a
21	BATF	chr1:179520477-179520820	GM12878	blood:	n/a	chr1:179520650-179520661
22	MAFK	chr1:179520554-179520760	IMR90	lung:	n/a	n/a
23	JUND	chr1:179520498-179520786	K562	blood:	n/a	n/a
24	BACH1	chr1:179520636-179520732	H1-hESC	embryonic stem cell:	n/a	n/a
25	EP300	chr1:179520574-179520745	GM12878	blood:	n/a	n/a
26	BATF	chr1:179520426-179520797	GM12878	blood:	n/a	chr1:179520650-179520661
27	EP300	chr1:179520503-179520780	GM12878	blood:	n/a	n/a
28	POLR2A	chr1:179520421-179520842	H1-neurons	neurons:	n/a	n/a
29	MAX	chr1:179520534-179520741	Hela-S3	cervix:	n/a	n/a
30	STAT3	chr1:179520505-179520792	MCF10A-Er-Src	breast:	n/a	n/a
31	RUNX3	chr1:179520450-179520734	GM12878	blood:	n/a	n/a
32	CEBPB	chr1:179520060-179520722	A549	lung:	n/a	n/a
33	MYC	chr1:179520483-179520783	NB4	blood:	n/a	n/a
34	STAT3	chr1:179520501-179520819	MCF10A-Er-Src	breast:	n/a	n/a
35	MAX	chr1:179520424-179520829	NB4	blood:	n/a	n/a
36	MAFF	chr1:179520488-179520806	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000261250	TF binding region

rs_ID	r²[population]
rs16854292	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61747727	1.00[AMR][1000 genomes]
rs7525384	1.00[AMR][1000 genomes]

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179515600-179521800	Enhancers	Placenta	Placenta
2	chr1:179518600-179521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:179519600-179521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:179519600-179521000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:179519600-179521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:179519800-179521400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:179520000-179520800	Enhancers	HSMMtube	muscle
8	chr1:179520000-179521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:179520000-179521000	Enhancers	Hela-S3	cervix
10	chr1:179520000-179521000	Enhancers	NHEK	skin
11	chr1:179520000-179521400	Enhancers	GM12878-XiMat	blood
12	chr1:179520200-179521000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:179520200-179521800	Enhancers	A549	lung
14	chr1:179520400-179521000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:179520600-179520800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:179520600-179521000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:179520600-179521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:179520600-179521200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:179520600-179521400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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