Variant report

Variant	rs16854380
Chromosome Location	chr3:143538848-143538849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6769847	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143529600-143540600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
4	chr3:143530600-143539800	Weak transcription	Ovary	ovary
5	chr3:143530600-143540600	Weak transcription	Placenta	Placenta
6	chr3:143530800-143540800	Weak transcription	Fetal Stomach	stomach
7	chr3:143531000-143539800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:143531000-143543200	Weak transcription	NHDF-Ad	bronchial
9	chr3:143531400-143539000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:143531800-143539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:143531800-143543200	Weak transcription	Aorta	Aorta
12	chr3:143533600-143543200	Weak transcription	Fetal Lung	lung
13	chr3:143533800-143539400	Weak transcription	Spleen	Spleen
14	chr3:143533800-143540600	Weak transcription	Primary B cells from cord blood	blood
15	chr3:143533800-143543200	Weak transcription	Right Atrium	heart
16	chr3:143534000-143539800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:143534000-143540600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:143534200-143539600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:143534200-143539800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:143534200-143540000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:143534400-143539400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:143534400-143539400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:143534400-143539800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:143534400-143540600	Weak transcription	Fetal Thymus	thymus
25	chr3:143535200-143539200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:143536000-143545200	Weak transcription	Gastric	stomach
27	chr3:143537400-143539200	Weak transcription	Esophagus	oesophagus
28	chr3:143538000-143542200	Enhancers	Brain Substantia Nigra	brain
29	chr3:143538400-143539800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr3:143538600-143539600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:143538600-143542000	Enhancers	Brain Cingulate Gyrus	brain
32	chr3:143538800-143541800	Enhancers	Brain Inferior Temporal Lobe	brain

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