Variant report

Variant	rs16854773
Chromosome Location	chr1:179778502-179778503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11800337	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11807136	1.00[YRI][hapmap]
rs11811049	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011407	chr1:179733193-179799430	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520418	chr1:179761601-179794602	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv519307	chr1:179766086-179795505	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179774600-179779600	Enhancers	Placenta	Placenta
2	chr1:179776200-179779000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:179776200-179779200	Enhancers	Fetal Intestine Small	intestine
4	chr1:179776600-179778800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:179776600-179778800	Weak transcription	Esophagus	oesophagus
6	chr1:179777000-179781600	Enhancers	Fetal Thymus	thymus
7	chr1:179777200-179779200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:179777200-179783600	Weak transcription	Right Atrium	heart
9	chr1:179777400-179778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:179777800-179778800	Weak transcription	Stomach Mucosa	stomach
11	chr1:179778200-179778600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:179778200-179778600	Weak transcription	Fetal Intestine Large	intestine
13	chr1:179778400-179779000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:179778400-179779000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:179778400-179780000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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