Variant report
| Variant | rs16855508 |
|---|---|
| Chromosome Location | chr3:144143313-144143314 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C3orf58-4 | chr3:144142931-144144066 | ucscGeneNc_uc003eve_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10490828 | 0.83[AFR][1000 genomes] |
| rs16855355 | 1.00[AFR][1000 genomes] |
| rs16855363 | 1.00[AFR][1000 genomes] |
| rs16855382 | 1.00[AFR][1000 genomes] |
| rs16855384 | 1.00[AFR][1000 genomes] |
| rs16855385 | 1.00[AFR][1000 genomes] |
| rs16855407 | 1.00[AFR][1000 genomes] |
| rs16855456 | 1.00[AFR][1000 genomes] |
| rs16855511 | 1.00[AFR][1000 genomes] |
| rs16855516 | 1.00[AFR][1000 genomes] |
| rs16855523 | 1.00[AFR][1000 genomes] |
| rs2082510 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532633 | chr3:143802417-144440646 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011685 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv536751 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv591929 | chr3:144123401-144188561 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv1012058 | chr3:144139713-144183108 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
