Variant report

Variant	rs16855905
Chromosome Location	chr2:10304571-10304572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10303041..10305346-chr2:10310124..10311738,2	MCF-7	breast:
2	chr2:10302901..10305330-chr2:10325922..10328605,2	K562	blood:
3	chr2:10302897..10304868-chr2:10308947..10311458,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17313689	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17313696	0.81[ASN][1000 genomes]
rs35110249	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv873636	chr2:10300390-10331919	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10273800-10330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:10276400-10307400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:10277600-10321600	Weak transcription	K562	blood
4	chr2:10278000-10311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:10282200-10316600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:10285600-10307400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:10285800-10310400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:10286400-10331400	Weak transcription	Spleen	Spleen
9	chr2:10286800-10312400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:10287000-10312000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:10288400-10307600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:10290200-10351400	Strong transcription	Dnd41	blood
13	chr2:10293000-10307600	Weak transcription	Gastric	stomach
14	chr2:10295400-10306400	Strong transcription	Thymus	Thymus
15	chr2:10296200-10310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:10296200-10314400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:10296400-10310400	Weak transcription	Hela-S3	cervix
18	chr2:10296400-10312400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:10296400-10312600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:10296800-10309800	Weak transcription	A549	lung
21	chr2:10299200-10305200	Enhancers	HUVEC	blood vessel
22	chr2:10299600-10305800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:10299800-10310400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:10300000-10307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:10300200-10307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:10300600-10304600	Weak transcription	Fetal Stomach	stomach
27	chr2:10300600-10307800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr2:10301200-10306000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:10301200-10310000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:10301800-10304600	Enhancers	Osteobl	bone
31	chr2:10301800-10305000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:10302200-10305200	Enhancers	Brain Germinal Matrix	brain
33	chr2:10302400-10309600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:10302400-10337600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr2:10302800-10305600	Weak transcription	HSMMtube	muscle
36	chr2:10302800-10309600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr2:10303000-10305000	Genic enhancers	Fetal Thymus	thymus
38	chr2:10303000-10309800	Weak transcription	HSMM	muscle
39	chr2:10303200-10309600	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:10303600-10304600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr2:10303600-10305000	Enhancers	Primary B cells from cord blood	blood
42	chr2:10303600-10305000	Enhancers	Primary B cells from peripheral blood	blood
43	chr2:10303600-10305000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr2:10303800-10304800	Enhancers	Primary hematopoietic stem cells	blood
45	chr2:10303800-10304800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:10303800-10307200	Weak transcription	Fetal Intestine Large	intestine
47	chr2:10303800-10307400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:10304000-10305000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:10304000-10305200	Weak transcription	Fetal Intestine Small	intestine
50	chr2:10304000-10306000	Strong transcription	Primary monocytes fromperipheralblood	blood

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