Variant report

Variant	rs16856413
Chromosome Location	chr2:10699666-10699667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10673867..10676091-chr2:10699484..10701243,2	K562	blood:
2	chr2:10691848..10694045-chr2:10699355..10701357,2	K562	blood:
3	chr2:10660893..10663493-chr2:10697519..10700150,2	K562	blood:
4	chr2:10692099..10694408-chr2:10696409..10700147,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16856528	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs34359340	1.00[AMR][1000 genomes]
rs6704981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6716761	1.00[AMR][1000 genomes]
rs6728638	1.00[AMR][1000 genomes]
rs6730897	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587282	1.00[AMR][1000 genomes]
rs7599759	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv873661	chr2:10675549-10703476	Bivalent Enhancer Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525241	chr2:10684391-10703476	Bivalent Enhancer Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv522123	chr2:10696583-10705639	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10688200-10708800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10689200-10710600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:10689800-10701800	Weak transcription	Pancreas	Pancrea
4	chr2:10691200-10701400	Weak transcription	Right Atrium	heart
5	chr2:10691800-10700800	Weak transcription	Spleen	Spleen
6	chr2:10692200-10709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:10692600-10705400	Weak transcription	Fetal Thymus	thymus
8	chr2:10693000-10708800	Weak transcription	NHEK	skin
9	chr2:10693200-10700200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:10693200-10700200	Weak transcription	Brain Germinal Matrix	brain
11	chr2:10694200-10700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:10694200-10710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:10695400-10704600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:10696000-10701200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:10696000-10701200	Weak transcription	Right Ventricle	heart
16	chr2:10696000-10704400	Weak transcription	Lung	lung
17	chr2:10696000-10709200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:10696000-10710200	Weak transcription	Left Ventricle	heart
19	chr2:10696400-10700200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:10696400-10701400	Weak transcription	Adipose Nuclei	Adipose
21	chr2:10696600-10701200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:10696600-10710000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:10697000-10700400	Weak transcription	Fetal Intestine Small	intestine
24	chr2:10697200-10700000	Weak transcription	Primary T cells from cord blood	blood
25	chr2:10697600-10701800	Weak transcription	NHLF	lung
26	chr2:10697600-10704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:10697600-10705000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:10697600-10708800	Weak transcription	Thymus	Thymus
29	chr2:10697800-10700000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:10697800-10700600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:10697800-10701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:10697800-10705600	Weak transcription	Brain Anterior Caudate	brain
33	chr2:10698000-10700200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:10698000-10709000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:10698200-10701400	Weak transcription	Ovary	ovary
36	chr2:10698200-10706000	Weak transcription	Brain Angular Gyrus	brain
37	chr2:10698200-10706000	Weak transcription	NH-A	brain
38	chr2:10698200-10709000	Weak transcription	Dnd41	blood
39	chr2:10698200-10709800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:10698400-10705200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr2:10698600-10700200	Strong transcription	Fetal Stomach	stomach
42	chr2:10698600-10700400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr2:10698600-10705000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr2:10698600-10736600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr2:10698800-10700800	Strong transcription	Fetal Brain Female	brain
46	chr2:10698800-10701200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:10698800-10704400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:10698800-10709200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr2:10698800-10710400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:10699000-10701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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