Variant report

Variant	rs16856420
Chromosome Location	chr1:180736428-180736429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12062205	1.00[ASN][1000 genomes]
rs12723609	1.00[CHB][hapmap]
rs12754682	1.00[CHB][hapmap]
rs17301132	1.00[CHB][hapmap]
rs17373022	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3845401	1.00[CHB][hapmap]
rs6663339	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180713400-180742200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:180714800-180740600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:180715400-180747600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
6	chr1:180731800-180742400	Weak transcription	NHLF	lung
7	chr1:180732600-180740600	Weak transcription	HSMM	muscle
8	chr1:180734600-180739800	Weak transcription	Fetal Heart	heart
9	chr1:180734800-180739600	Weak transcription	Fetal Brain Female	brain
10	chr1:180734800-180742200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:180736000-180736800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:180736000-180739600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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