Variant report

Variant	rs16857814
Chromosome Location	chr4:44928305-44928306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10001122	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10004083	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031560	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10031893	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10212979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2029967	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2220987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28629296	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28635189	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4695067	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9291256	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884329	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9996140	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44919200-44928400	Weak transcription	Psoas Muscle	Psoas
2	chr4:44921000-44928800	Weak transcription	Fetal Heart	heart
3	chr4:44928000-44928600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:44928200-44928400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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