Variant report

Variant	rs16859002
Chromosome Location	chr3:111699794-111699795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111698497..111700927-chr3:111703000..111705838,3	K562	blood:
2	chr3:111697752..111700080-chr3:112279042..112280721,2	K562	blood:

Variant related genes	Relation type
ENSG00000144848	Chromatin interaction
ENSG00000138459	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2172251	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774747	1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111697200-111700000	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr3:111697600-111699800	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr3:111697600-111700000	Active TSS	NH-A	brain
4	chr3:111698200-111700200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:111698200-111700400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr3:111698400-111699800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:111698400-111710200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111698600-111699800	Weak transcription	Esophagus	oesophagus
9	chr3:111698600-111699800	Weak transcription	Stomach Mucosa	stomach
10	chr3:111698600-111700000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr3:111698600-111700200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr3:111698600-111701200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:111698600-111717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:111698600-111717400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:111698600-111717400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:111698800-111699800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:111698800-111699800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:111698800-111699800	Weak transcription	Aorta	Aorta
19	chr3:111698800-111699800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr3:111698800-111699800	Weak transcription	Right Ventricle	heart
21	chr3:111698800-111700000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:111698800-111700000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:111698800-111700000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:111698800-111700000	Flanking Active TSS	Fetal Brain Female	brain
25	chr3:111698800-111700000	Enhancers	Hela-S3	cervix
26	chr3:111698800-111700200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr3:111698800-111700200	Enhancers	Brain Angular Gyrus	brain
28	chr3:111698800-111700600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:111698800-111700800	Enhancers	Brain Hippocampus Middle	brain
30	chr3:111698800-111700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:111698800-111701000	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:111698800-111701000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr3:111698800-111701000	Enhancers	Adipose Nuclei	Adipose
34	chr3:111698800-111701200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:111698800-111701600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr3:111698800-111701600	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr3:111698800-111701600	Enhancers	Brain Substantia Nigra	brain
38	chr3:111698800-111701800	Weak transcription	HSMM	muscle
39	chr3:111698800-111705200	Weak transcription	Fetal Intestine Large	intestine
40	chr3:111698800-111705800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:111698800-111705800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:111698800-111706200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr3:111698800-111717400	Weak transcription	Colonic Mucosa	Colon
44	chr3:111698800-111717400	Weak transcription	Placenta	Placenta
45	chr3:111698800-111717600	Weak transcription	HSMMtube	muscle
46	chr3:111699000-111699800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:111699000-111699800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr3:111699000-111700000	Enhancers	Colon Smooth Muscle	Colon
49	chr3:111699000-111700800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr3:111699000-111700800	Enhancers	Fetal Heart	heart

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