Variant report

Variant	rs16859172
Chromosome Location	chr3:111812265-111812266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111803684..111806522-chr3:111810279..111813217,3	K562	blood:
2	chr3:111803684..111807677-chr3:111807818..111813217,8	K562	blood:

Variant related genes	Relation type
ENSG00000114529	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11921017	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922334	1.00[AMR][1000 genomes]
rs11923576	1.00[AMR][1000 genomes]
rs11924673	1.00[AMR][1000 genomes]
rs11927035	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11929601	0.86[AFR][1000 genomes]
rs4572741	1.00[AMR][1000 genomes]
rs6796926	1.00[AMR][1000 genomes]
rs9825472	1.00[AMR][1000 genomes]
rs9880147	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111806000-111821600	Weak transcription	Lung	lung
2	chr3:111806800-111813600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:111806800-111816400	Weak transcription	Aorta	Aorta
4	chr3:111807000-111816200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:111807400-111814200	Weak transcription	A549	lung
6	chr3:111810000-111812400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr3:111810200-111814200	Weak transcription	Hela-S3	cervix
8	chr3:111810200-111815600	Weak transcription	HUVEC	blood vessel
9	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
10	chr3:111810800-111812400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:111811000-111812400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:111811000-111812400	Enhancers	Primary B cells from cord blood	blood
13	chr3:111811000-111812400	Enhancers	Fetal Kidney	kidney
14	chr3:111811000-111812400	Enhancers	Fetal Lung	lung
15	chr3:111811200-111812400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:111811200-111812400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:111811200-111812400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:111811200-111812400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:111811200-111812400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:111811200-111812400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:111811200-111812400	Flanking Active TSS	HSMMtube	muscle
22	chr3:111811200-111812600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr3:111811200-111812600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:111811200-111812600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:111811200-111812600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:111811400-111812400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:111811400-111812400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr3:111811400-111812400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:111811400-111812400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:111811400-111812400	Enhancers	Primary T cells from cord blood	blood
31	chr3:111811400-111812400	Enhancers	Primary hematopoietic stem cells	blood
32	chr3:111811400-111812400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr3:111811400-111812400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr3:111811400-111812600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:111811400-111813600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:111811600-111812800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:111811800-111812400	Enhancers	Small Intestine	intestine
38	chr3:111811800-111813600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:111811800-111813800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:111812000-111812400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:111812000-111812400	Flanking Active TSS	Fetal Heart	heart
42	chr3:111812000-111812400	Enhancers	Stomach Mucosa	stomach
43	chr3:111812000-111813000	Weak transcription	Placenta	Placenta
44	chr3:111812000-111814000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:111812000-111814000	Strong transcription	NHEK	skin
46	chr3:111812000-111814800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:111812000-111816000	Weak transcription	NHLF	lung
48	chr3:111812000-111816200	Weak transcription	GM12878-XiMat	blood
49	chr3:111812000-111825000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon

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