Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:112854639..112855483-chr3:112989629..112990412,2	MCF-7	breast:
2	chr3:112854647..112855593-chr3:113006621..113007668,9	MCF-7	breast:
3	chr3:112854651..112855751-chr3:112994357..112995381,6	MCF-7	breast:
4	chr3:112854694..112855593-chr3:112994517..112995397,2	MCF-7	breast:
5	chr3:112838001..112839541-chr3:112853891..112856823,2	MCF-7	breast:
6	chr3:112854592..112855216-chr3:112998271..112998782,2	MCF-7	breast:
7	chr3:112854611..112856025-chr3:113006063..113007441,4	K562	blood:
8	chr3:112854491..112855263-chr3:112965851..112966367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000144857	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10934220	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11705763	1.00[CEU][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11710826	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11713978	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11716287	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1350786	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16860551	0.86[JPT][hapmap]
rs17317973	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17318371	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1881944	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2613968	0.86[JPT][hapmap]
rs2700231	0.86[JPT][hapmap]
rs56874575	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218127	0.85[ASN][1000 genomes]
rs73223909	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73223910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223912	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223913	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223917	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112847800-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:112849400-112865200	Weak transcription	Fetal Stomach	stomach
3	chr3:112849800-112854800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:112851800-112854800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:112852200-112854800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:112852800-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:112854200-112855400	Enhancers	Colon Smooth Muscle	Colon
8	chr3:112854200-112855800	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:112854600-112855200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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