Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10497385	1.00[CEU][hapmap]
rs12465295	1.00[CEU][hapmap]
rs12465442	1.00[CEU][hapmap]
rs12467358	1.00[CEU][hapmap]
rs12477247	1.00[CEU][hapmap]
rs12478465	1.00[CEU][hapmap]
rs12615889	0.94[EUR][1000 genomes]
rs12622335	0.94[EUR][1000 genomes]
rs16860543	1.00[CEU][hapmap]
rs16860794	0.94[EUR][1000 genomes]
rs16860795	0.94[EUR][1000 genomes]
rs16860798	0.94[EUR][1000 genomes]
rs16860809	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2034854	0.85[EUR][1000 genomes]
rs2054162	0.88[EUR][1000 genomes]
rs2084731	0.94[EUR][1000 genomes]
rs2084732	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2122832	0.85[EUR][1000 genomes]
rs2293646	1.00[CEU][hapmap]
rs2357415	1.00[CEU][hapmap]
rs3792260	1.00[CEU][hapmap]
rs4313941	0.94[EUR][1000 genomes]
rs4404239	0.88[EUR][1000 genomes]
rs4482449	0.94[EUR][1000 genomes]
rs4972514	0.94[EUR][1000 genomes]
rs4972515	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4972845	0.87[EUR][1000 genomes]
rs4972849	0.94[EUR][1000 genomes]
rs4972850	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4972851	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4972852	0.91[EUR][1000 genomes]
rs6718477	1.00[CEU][hapmap]
rs6755100	1.00[CEU][hapmap]
rs733331	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173539600-173554200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:173541800-173543600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:173543000-173545400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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