Variant report

Variant	rs16860832
Chromosome Location	chr2:173575373-173575374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173570740..173572513-chr2:173573082..173575442,2	K562	blood:
2	chr2:172559872..172560770-chr2:173574898..173575445,2	K562	blood:
3	chr2:173574519..173576819-chr2:173577534..173580369,2	MCF-7	breast:
4	chr2:173575174..173575976-chr2:173657407..173658048,2	MCF-7	breast:
5	chr2:173331898..173332822-chr2:173574646..173575447,2	K562	blood:
6	chr2:173473529..173474342-chr2:173574927..173575851,2	MCF-7	breast:
7	chr2:173332288..173332847-chr2:173574947..173575940,3	MCF-7	breast:
8	chr2:173457626..173459149-chr2:173574802..173575976,4	MCF-7	breast:
9	chr2:173575339..173578126-chr2:173587981..173590920,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16860817	0.95[AFR][1000 genomes]
rs16860830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173564200-173575600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173565800-173577200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:173566000-173575400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:173572400-173575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:173574600-173576400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:173575000-173575400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:173575000-173575600	Enhancers	NHLF	lung
8	chr2:173575000-173576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:173575000-173576200	Enhancers	HSMM	muscle
10	chr2:173575000-173576200	Enhancers	Osteobl	bone
11	chr2:173575200-173575600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:173575200-173575600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:173575200-173576000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:173575200-173576000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:173575200-173576200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:173575200-173576200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr2:173575200-173576200	Enhancers	HSMMtube	muscle
18	chr2:173575200-173576200	Enhancers	NH-A	brain
19	chr2:173575200-173576200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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