Variant report

Variant	rs16860869
Chromosome Location	chr2:173647356-173647357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173647314..173650296-chr2:173654073..173656104,2	MCF-7	breast:
2	chr2:173628252..173630626-chr2:173646925..173649418,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10188856	0.83[ASN][1000 genomes]
rs12619176	0.83[ASN][1000 genomes]
rs13007746	0.83[ASN][1000 genomes]
rs2042562	0.83[ASN][1000 genomes]
rs2081406	0.83[ASN][1000 genomes]
rs4972854	0.83[ASN][1000 genomes]
rs6433380	0.94[ASN][1000 genomes]
rs6711789	0.83[ASN][1000 genomes]
rs6713148	0.83[ASN][1000 genomes]
rs6713665	0.83[ASN][1000 genomes]
rs6728026	0.83[ASN][1000 genomes]
rs6741466	0.83[ASN][1000 genomes]
rs6741842	0.83[ASN][1000 genomes]
rs6745299	0.83[ASN][1000 genomes]
rs6755658	0.83[ASN][1000 genomes]
rs7563076	0.83[ASN][1000 genomes]
rs7570254	0.83[ASN][1000 genomes]
rs7584737	0.83[ASN][1000 genomes]
rs7585545	0.83[ASN][1000 genomes]
rs9287959	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173642600-173669800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:173646000-173648800	Enhancers	HMEC	breast
3	chr2:173646600-173647400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:173646600-173647400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:173646600-173648000	Enhancers	NHDF-Ad	bronchial
6	chr2:173646600-173648400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:173646600-173648800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:173646600-173648800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:173646800-173647600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:173646800-173648000	Enhancers	NH-A	brain
11	chr2:173646800-173648000	Enhancers	NHLF	lung
12	chr2:173646800-173648200	Enhancers	Osteobl	bone
13	chr2:173646800-173648400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:173646800-173648600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:173647000-173647400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:173647000-173647800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:173647000-173648600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:173647000-173648600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:173647000-173648600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:173647000-173648600	Enhancers	NHEK	skin
21	chr2:173647000-173648800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:173647000-173649000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:173647200-173648000	Enhancers	Hela-S3	cervix
24	chr2:173647200-173648000	Enhancers	HSMMtube	muscle
25	chr2:173647200-173648200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:173647200-173648600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr2:173647200-173648600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr2:173647200-173648600	Enhancers	HSMM	muscle
29	chr2:173647200-173648800	Enhancers	Fetal Heart	heart

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