Variant report

Variant	rs16861288
Chromosome Location	chr2:174017047-174017048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173912619..173914756-chr2:174014173..174017350,3	MCF-7	breast:
2	chr2:174011042..174014620-chr2:174016771..174020819,3	MCF-7	breast:
3	chr2:174016557..174018209-chr2:174020513..174022324,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2468389	1.00[CHB][hapmap]
rs2884399	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv834461	chr2:173979734-174038471	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174007800-174021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:174007800-174021000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:174008600-174020800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:174012800-174018000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:174012800-174018400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:174012800-174018400	Enhancers	HMEC	breast
7	chr2:174012800-174018400	Enhancers	Osteobl	bone
8	chr2:174012800-174018600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:174012800-174018600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:174012800-174018600	Enhancers	NHDF-Ad	bronchial
11	chr2:174012800-174018600	Enhancers	NHLF	lung
12	chr2:174012800-174020000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:174012800-174026600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:174013000-174017600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:174013000-174018000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:174013200-174017200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:174013200-174018600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:174013400-174025400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:174013600-174017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:174013600-174018000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:174013600-174024600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:174014400-174017200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr2:174014400-174017400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:174014400-174017400	Enhancers	HSMM	muscle
25	chr2:174014400-174018400	Enhancers	Hela-S3	cervix
26	chr2:174014600-174018200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:174014600-174021000	Weak transcription	Ovary	ovary
28	chr2:174015200-174018200	Enhancers	NH-A	brain
29	chr2:174015400-174027400	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:174015400-174047000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:174015800-174017400	Enhancers	HUVEC	blood vessel
32	chr2:174015800-174018600	Weak transcription	Left Ventricle	heart
33	chr2:174016000-174017400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr2:174016000-174017400	Enhancers	Small Intestine	intestine
35	chr2:174016200-174017600	Flanking Active TSS	A549	lung
36	chr2:174016200-174048800	Weak transcription	K562	blood
37	chr2:174016400-174017200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr2:174016400-174017200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr2:174016400-174017400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr2:174016400-174018000	Enhancers	Fetal Heart	heart
41	chr2:174016400-174028200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:174016600-174017200	Flanking Active TSS	NHEK	skin
43	chr2:174016600-174018000	Weak transcription	Right Ventricle	heart
44	chr2:174016800-174017200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr2:174016800-174020600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr2:174017000-174017400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr2:174017000-174018400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:174017000-174018600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:174017000-174018600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:174017000-174019000	Enhancers	Psoas Muscle	Psoas

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