Variant report

Variant	rs16861477
Chromosome Location	chr2:174135843-174135844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:174133324..174136222-chr2:174137926..174139659,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1123669	1.00[ASN][1000 genomes]
rs16861466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16861474	1.00[ASN][1000 genomes]
rs62174397	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174083400-174136400	Weak transcription	Esophagus	oesophagus
2	chr2:174101600-174136400	Weak transcription	Hela-S3	cervix
3	chr2:174101800-174136200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:174122600-174136400	Weak transcription	Stomach Mucosa	stomach
5	chr2:174123800-174136800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:174126000-174138000	Weak transcription	Psoas Muscle	Psoas
7	chr2:174126400-174138800	Weak transcription	Right Ventricle	heart
8	chr2:174128200-174136200	Weak transcription	HSMMtube	muscle
9	chr2:174130000-174136200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:174130000-174136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:174130000-174136400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:174130000-174136600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:174130000-174137800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:174131000-174137800	Weak transcription	Brain Germinal Matrix	brain
15	chr2:174131200-174136400	Weak transcription	NHEK	skin
16	chr2:174131200-174139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:174131400-174136000	Weak transcription	Pancreas	Pancrea
18	chr2:174131400-174136200	Weak transcription	Gastric	stomach
19	chr2:174131400-174136400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:174131400-174136600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:174131400-174136800	Weak transcription	A549	lung
22	chr2:174131600-174136000	Weak transcription	Ovary	ovary
23	chr2:174131600-174136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:174131600-174136400	Weak transcription	Osteobl	bone
25	chr2:174132000-174136200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:174132000-174136600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:174132800-174136200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:174132800-174136200	Weak transcription	Fetal Intestine Large	intestine
29	chr2:174132800-174136400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:174132800-174136400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:174132800-174136400	Weak transcription	HMEC	breast
32	chr2:174133000-174136400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:174133000-174136600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:174133000-174137600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:174133200-174136400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr2:174133200-174137800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:174133400-174136000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr2:174133400-174136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:174133600-174138800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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