Variant report

Variant	rs16861770
Chromosome Location	chr1:168908862-168908863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6659232	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672146	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6674817	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6693104	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6700048	1.00[EUR][1000 genomes]
rs7548999	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168907800-168909600	Enhancers	Fetal Intestine Small	intestine
2	chr1:168907800-168909800	Enhancers	Fetal Intestine Large	intestine
3	chr1:168908000-168910000	Enhancers	Hela-S3	cervix
4	chr1:168908400-168909000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:168908400-168909800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:168908600-168909400	Enhancers	Fetal Heart	heart
7	chr1:168908600-168910200	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:168908600-168910200	Enhancers	Stomach Mucosa	stomach
9	chr1:168908800-168909200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:168908800-168909400	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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