Variant report

Variant	rs16861997
Chromosome Location	chr1:169158980-169158981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169156463..169159221-chr1:169159904..169163374,4	K562	blood:

Variant related genes	Relation type
ENSG00000143156	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1028180	1.00[CEU][hapmap]
rs1040500	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1040501	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes]
rs1080268	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs1208373	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12733001	1.00[CEU][hapmap]
rs12735021	0.83[AMR][1000 genomes]
rs12736886	0.83[AMR][1000 genomes]
rs12748624	1.00[CEU][hapmap]
rs12751379	1.00[CEU][hapmap]
rs12752953	1.00[CEU][hapmap]
rs1320964	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1320966	1.00[CEU][hapmap]
rs1533518	1.00[CEU][hapmap]
rs1533519	1.00[CEU][hapmap]
rs16828165	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs16862051	1.00[CEU][hapmap]
rs16862081	1.00[CEU][hapmap]
rs16862097	1.00[CEU][hapmap]
rs2037249	1.00[CEU][hapmap]
rs2066001	1.00[CEU][hapmap]
rs2271762	1.00[CEU][hapmap]
rs3213586	1.00[CEU][hapmap]
rs3213587	1.00[CEU][hapmap]
rs34032351	0.83[AMR][1000 genomes]
rs35207260	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35471075	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35527028	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36040633	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs3753299	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs3766033	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs3766034	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[EUR][1000 genomes]
rs3766048	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3766049	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3766072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766075	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs3766076	0.82[AMR][1000 genomes]
rs3766083	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3766084	1.00[CEU][hapmap]
rs3820054	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4140538	1.00[CEU][hapmap]
rs4140539	1.00[CEU][hapmap]
rs41442344	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4284298	0.83[AMR][1000 genomes]
rs60378653	0.83[AMR][1000 genomes]
rs6675220	1.00[CEU][hapmap]
rs68023805	0.83[AMR][1000 genomes]
rs72637226	0.83[AMR][1000 genomes]
rs7528751	1.00[CEU][hapmap]
rs7538158	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169150400-169162600	Weak transcription	Psoas Muscle	Psoas
3	chr1:169155600-169162800	Weak transcription	A549	lung
4	chr1:169158000-169162200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:169158800-169159200	Enhancers	Pancreatic Islets	Pancreatic Islet

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