Variant report

Variant	rs16862834
Chromosome Location	chr3:150467426-150467427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150457190..150462784-chr3:150464439..150467778,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72993405	1.00[AMR][1000 genomes]
rs73006995	0.94[AFR][1000 genomes]
rs7643119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150453800-150478000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150454600-150469800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:150454600-150477200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:150456400-150477600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:150456600-150477600	Weak transcription	Fetal Brain Male	brain
6	chr3:150456800-150477400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:150457000-150478800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:150457600-150477600	Weak transcription	HUVEC	blood vessel
9	chr3:150458200-150469600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:150458400-150471600	Genic enhancers	HepG2	liver
11	chr3:150458800-150469400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:150459000-150477600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:150459400-150468400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:150460200-150477600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:150460400-150467800	Enhancers	Liver	Liver
16	chr3:150460400-150468800	Weak transcription	Colonic Mucosa	Colon
17	chr3:150460400-150469000	Weak transcription	Fetal Thymus	thymus
18	chr3:150460400-150469600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:150460400-150475200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:150460400-150477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:150460600-150469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:150460600-150469800	Weak transcription	Fetal Stomach	stomach
23	chr3:150460600-150470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:150460600-150470800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:150461200-150471800	Enhancers	Stomach Mucosa	stomach
26	chr3:150461200-150474000	Weak transcription	Dnd41	blood
27	chr3:150461600-150468200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:150461600-150469000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:150461600-150469200	Weak transcription	Primary T cells from cord blood	blood
30	chr3:150461800-150468600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:150461800-150469600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:150461800-150472000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:150462800-150477000	Weak transcription	Brain Angular Gyrus	brain
34	chr3:150463000-150475400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:150463000-150477800	Weak transcription	NH-A	brain
36	chr3:150463000-150478400	Weak transcription	HSMM	muscle
37	chr3:150463200-150467800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:150463200-150468400	Weak transcription	Fetal Lung	lung
39	chr3:150463200-150469600	Weak transcription	Fetal Muscle Leg	muscle
40	chr3:150463200-150469600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:150463200-150469600	Weak transcription	HMEC	breast
42	chr3:150463200-150470600	Weak transcription	NHLF	lung
43	chr3:150463200-150475600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:150463200-150477600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:150463400-150468400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr3:150463800-150469000	Enhancers	Ovary	ovary
47	chr3:150464200-150469800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr3:150464800-150467600	Weak transcription	Spleen	Spleen
49	chr3:150464800-150468400	Weak transcription	Thymus	Thymus
50	chr3:150464800-150468800	Weak transcription	Primary T cells fromperipheralblood	blood

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