Variant report

Variant	rs16862962
Chromosome Location	chr3:150602176-150602177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13069091	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13074953	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13075078	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13075343	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs16862966	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34110028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34204678	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34741729	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4234293	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4680029	1.00[CHB][hapmap]
rs569140	1.00[CHB][hapmap]
rs569220	1.00[CHB][hapmap]
rs7649448	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150595000-150604800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:150597600-150603200	Weak transcription	Fetal Heart	heart
3	chr3:150598200-150603400	Weak transcription	Left Ventricle	heart
4	chr3:150600200-150604600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:150600200-150605400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:150600400-150602400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:150601400-150602200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:150601800-150602200	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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