Variant report

Variant	rs16863058
Chromosome Location	chr1:170116792-170116793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10494482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919308	1.00[YRI][hapmap]
rs12075997	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12089836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330377	1.00[CHB][hapmap]
rs1541160	1.00[CHB][hapmap]
rs2065950	1.00[CHB][hapmap]
rs2474708	1.00[CHB][hapmap]
rs41272487	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476269	1.00[CHB][hapmap]
rs522444	1.00[CHB][hapmap]
rs527261	1.00[CHB][hapmap]
rs541896	1.00[CHB][hapmap]
rs546894	1.00[CHB][hapmap]
rs571398	1.00[CHB][hapmap]
rs574053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs614044	1.00[CHB][hapmap]
rs628436	1.00[CHB][hapmap]
rs6668310	1.00[CHB][hapmap]
rs6676005	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6677004	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683076	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694304	1.00[CHB][hapmap]
rs73023530	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355043	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539241	1.00[CHB][hapmap]
rs973015	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170114200-170116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:170114200-170117000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:170114600-170116800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:170114600-170117000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:170114800-170116800	Enhancers	Primary T cells from cord blood	blood
6	chr1:170115000-170116800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:170115000-170116800	Flanking Active TSS	Dnd41	blood
8	chr1:170115400-170119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:170115600-170117800	Weak transcription	Osteobl	bone
10	chr1:170115800-170116800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:170116200-170117200	Enhancers	Fetal Heart	heart
12	chr1:170116200-170118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:170116200-170119200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:170116200-170119200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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