Variant report

Variant	rs16864096
Chromosome Location	chr1:171105794-171105795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:171105781-171105831	MCF10A-Er-Src	breast:	n/a
2	chr1:171105781-171105831	LNCaP	prostate:	n/a
3	chr1:171105781-171105831	SK-N-SH_RA	brain:	n/a
4	chr1:171105781-171105831	HCPEpiC	choroid plexus:	n/a
5	chr1:171105781-171105831	Hepatocyte	liver:	n/a
6	chr1:171105781-171105831	U87	brain:	n/a
7	chr1:171105781-171105831	Jurkat	blood:	n/a
8	chr1:171105781-171105831	A549	lung:	n/a
9	chr1:171105781-171105831	GM12891	blood:	n/a
10	chr1:171105781-171105831	SKMC	muscle:	n/a
11	chr1:171105781-171105831	AG09309	skin:	n/a
12	chr1:171105781-171105831	SK-N-MC	brain:	n/a
13	chr1:171105781-171105831	HCT-116	colon:	n/a
14	chr1:171105781-171105831	NT2-D1	testis:	n/a
15	chr1:171105781-171105831	PrEC	prostate:	n/a
16	chr1:171105781-171105831	NHBE	bronchial:	n/a
17	chr1:171105781-171105831	HUVEC	blood vessel:	n/a
18	chr1:171105781-171105831	HPAEpiC	pulmonary alveolar:	n/a
19	chr1:171105781-171105831	AG04450	lung:	fetal
20	chr1:171105781-171105831	T-47D	breast:	n/a
21	chr1:171105781-171105831	HIPEpiC	eye:	n/a
22	chr1:171105781-171105831	IMR90	lung:	fetal
23	chr1:171105781-171105831	GM12878	blood:	n/a
24	chr1:171105781-171105831	HAEpiC	amniotic membrane:	n/a
25	chr1:171105781-171105831	HepG2	liver:	n/a
26	chr1:171105781-171105831	SAEC	small airway:	n/a
27	chr1:171105781-171105831	HEK293	kidney:	embryo
28	chr1:171105781-171105831	AoSMC	blood vessel:	n/a
29	chr1:171105781-171105831	HRPEpiC	eye:	n/a
30	chr1:171105781-171105831	AG04449	skin:	fetal
31	chr1:171105781-171105831	RPTEC	kidney:	n/a
32	chr1:171105781-171105831	MCF-7	breast:	n/a
33	chr1:171105781-171105831	H1-hESC	embryonic stem cell:	embryo
34	chr1:171105781-171105831	HMEC	breast:	n/a
35	chr1:171105781-171105831	BJ	skin:	n/a
36	chr1:171105781-171105831	BE2_C	brain:	n/a
37	chr1:171105781-171105831	ovcar-3	ovarian:	n/a
38	chr1:171105781-171105831	HEEpiC	esophagus:	n/a
39	chr1:171105781-171105831	NB4	blood:	n/a
40	chr1:171105781-171105831	CMK	blood:	n/a
41	chr1:171105781-171105831	GM06990	blood:	n/a
42	chr1:171105781-171105831	SK-N-SH	brain:	n/a
43	chr1:171105781-171105831	PANC-1	pancreas:	n/a
44	chr1:171105781-171105831	AG09319	gingival:	n/a
45	chr1:171105781-171105831	NH-A	brain:	n/a
46	chr1:171105781-171105831	HCF	heart:	n/a
47	chr1:171105781-171105831	K562	blood:	n/a
48	chr1:171105781-171105831	NHDF-neo	bronchial:	n/a
49	chr1:171105781-171105831	HNPCEpiC	eye:	n/a
50	chr1:171105781-171105831	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
FMO6P	CpG island

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10911839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912425	0.87[ASN][1000 genomes]
rs11811455	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1920151	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920152	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920153	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920154	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064079	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2064080	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235193	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2236872	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2236873	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2281003	0.88[ASN][1000 genomes]
rs4916390	0.90[ASN][1000 genomes]
rs58365744	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67522662	0.87[ASN][1000 genomes]
rs7881379	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7885012	0.87[ASN][1000 genomes]
rs909530	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16864096	FMO2	cis	Adipose Subcutaneous	GTEx
rs16864096	RP1-127D3.4	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171091600-171109000	Weak transcription	Right Ventricle	heart
2	chr1:171097800-171107200	Weak transcription	Left Ventricle	heart
3	chr1:171105200-171107600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:171105200-171107800	Enhancers	Stomach Mucosa	stomach
5	chr1:171105400-171105800	Weak transcription	Fetal Lung	lung
6	chr1:171105400-171107200	Weak transcription	Right Atrium	heart
7	chr1:171105400-171111200	Weak transcription	Aorta	Aorta
8	chr1:171105600-171105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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