Variant report

Variant	rs16864610
Chromosome Location	chr2:177718220-177718221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177709383..177714584-chr2:177715247..177719528,6	K562	blood:

Variant related genes	Relation type
ENSG00000227098	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10183398	0.81[ASN][1000 genomes]
rs11892660	0.81[ASN][1000 genomes]
rs13398923	0.81[ASN][1000 genomes]
rs1358293	0.81[ASN][1000 genomes]
rs1358295	0.81[ASN][1000 genomes]
rs1513870	0.80[YRI][hapmap]
rs73033032	0.81[ASN][1000 genomes]
rs7562648	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177715800-177722800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr2:177716200-177722400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr2:177716400-177719000	Enhancers	Primary T cells from cord blood	blood
4	chr2:177716600-177722200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr2:177716600-177722600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:177716600-177722600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr2:177716600-177722800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:177716800-177721400	Weak transcription	Fetal Kidney	kidney
9	chr2:177717600-177718800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:177717600-177719400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr2:177717800-177718600	Weak transcription	Small Intestine	intestine
12	chr2:177717800-177718800	Weak transcription	Brain Germinal Matrix	brain
13	chr2:177717800-177719800	Weak transcription	Fetal Thymus	thymus
14	chr2:177717800-177721000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:177717800-177722400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr2:177718000-177718400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:177718000-177718800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:177718000-177719000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr2:177718000-177719800	Weak transcription	Thymus	Thymus
20	chr2:177718200-177719200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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