Variant report

Variant	rs16865184
Chromosome Location	chr2:178228177-178228178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10497507	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865187	0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16865191	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16865226	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865234	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16865279	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34744592	0.90[EUR][1000 genomes]
rs59108338	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv962042	chr2:178220899-178232397	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178214400-178228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:178218000-178256200	Weak transcription	HepG2	liver
4	chr2:178219200-178233600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:178225000-178228600	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:178225600-178231800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:178225600-178233000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:178227800-178228800	Enhancers	Ovary	ovary
10	chr2:178228000-178228200	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links