Variant report

Variant	rs16865731
Chromosome Location	chr2:7085236-7085237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7082801..7085400-chr2:7088516..7090192,2	MCF-7	breast:
2	chr2:7081106..7083233-chr2:7084171..7085831,2	MCF-7	breast:
3	chr2:7084388..7085908-chr2:7089261..7091175,2	K562	blood:
4	chr2:7082796..7085446-chr2:7087742..7089265,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10189549	0.85[YRI][hapmap]
rs10192053	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833326	chr2:6985027-7142564	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7068000-7087000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:7069200-7088200	Weak transcription	Right Ventricle	heart
3	chr2:7075200-7095600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:7077800-7085800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:7077800-7091200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:7078200-7089400	Weak transcription	Fetal Brain Male	brain
7	chr2:7078200-7110800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:7079000-7113400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:7080400-7094800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:7080800-7086800	Strong transcription	Dnd41	blood
11	chr2:7080800-7087000	Weak transcription	A549	lung
12	chr2:7081000-7086000	Strong transcription	Primary T cells from cord blood	blood
13	chr2:7081000-7086200	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:7081000-7086200	Strong transcription	HepG2	liver
15	chr2:7081200-7089000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:7081400-7085600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:7081400-7087000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:7081400-7089600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:7081400-7112200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:7081600-7085400	Strong transcription	Brain Germinal Matrix	brain
21	chr2:7081600-7085600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:7081600-7086200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:7081600-7094600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:7082400-7085800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:7082600-7085400	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:7082600-7086000	Weak transcription	Fetal Intestine Large	intestine
27	chr2:7082600-7088000	Weak transcription	Fetal Heart	heart
28	chr2:7082600-7091800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr2:7082600-7100800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr2:7082800-7085400	Weak transcription	Fetal Kidney	kidney
31	chr2:7082800-7085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:7082800-7090800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:7083200-7086200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr2:7083400-7086400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr2:7083400-7087000	Enhancers	Brain Substantia Nigra	brain
36	chr2:7083600-7085800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:7083600-7086200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
38	chr2:7083800-7085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:7083800-7129600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:7084000-7085400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:7084000-7086000	Genic enhancers	Left Ventricle	heart
42	chr2:7084000-7086200	Genic enhancers	Fetal Muscle Leg	muscle
43	chr2:7084000-7088000	Weak transcription	K562	blood
44	chr2:7084200-7085600	Weak transcription	Psoas Muscle	Psoas
45	chr2:7084200-7086200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr2:7084200-7086200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:7084200-7086200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr2:7084200-7087800	Weak transcription	Lung	lung
49	chr2:7084200-7089200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:7084200-7097200	Weak transcription	Fetal Lung	lung

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