Variant report

Variant	rs16866555
Chromosome Location	chr2:179701456-179701457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11892300	0.89[AFR][1000 genomes]
rs16866550	1.00[AMR][1000 genomes]
rs16866557	1.00[AMR][1000 genomes]
rs16866562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16866566	1.00[AMR][1000 genomes]
rs16866567	1.00[AMR][1000 genomes]
rs17428516	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179690600-179701800	Weak transcription	Lung	lung
2	chr2:179690600-179701800	Weak transcription	Pancreas	Pancrea
3	chr2:179693000-179701600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:179693000-179709200	Weak transcription	Aorta	Aorta
5	chr2:179693400-179701800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:179693400-179712600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:179693400-179726000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:179694000-179710000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:179694200-179713400	Weak transcription	Spleen	Spleen
10	chr2:179694400-179701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:179695600-179701600	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:179695600-179709000	Weak transcription	Ovary	ovary
13	chr2:179695600-179712600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:179695600-179712600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:179695600-179713000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr2:179695800-179701800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:179695800-179709000	Weak transcription	HSMMtube	muscle
18	chr2:179695800-179711000	Weak transcription	Right Ventricle	heart
19	chr2:179695800-179738400	Weak transcription	Fetal Intestine Large	intestine
20	chr2:179696400-179728800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr2:179696600-179701600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:179697200-179701600	Weak transcription	Thymus	Thymus
23	chr2:179698400-179701800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:179699200-179701600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr2:179699200-179702000	Weak transcription	Left Ventricle	heart
26	chr2:179699600-179708200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:179700000-179701600	Weak transcription	Primary T cells from cord blood	blood
28	chr2:179701000-179702800	Enhancers	Fetal Heart	heart
29	chr2:179701400-179701800	Strong transcription	Primary B cells from cord blood	blood
30	chr2:179701400-179701800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr2:179701400-179701800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr2:179701400-179702200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr2:179701400-179702200	Strong transcription	Fetal Thymus	thymus
34	chr2:179701400-179702400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr2:179701400-179702400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr2:179701400-179702600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr2:179701400-179703800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links