Variant report

Variant	rs16867566
Chromosome Location	chr5:15694993-15694994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57500588	1.00[EUR][1000 genomes]
rs62348076	1.00[EUR][1000 genomes]
rs62348082	1.00[EUR][1000 genomes]
rs62350580	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv597263	chr5:15672137-15720478	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv461983	chr5:15674635-15720106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv597264	chr5:15674635-15720106	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15684000-15695200	Weak transcription	HUVEC	blood vessel
2	chr5:15688400-15704200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:15690200-15695000	Enhancers	NHDF-Ad	bronchial
4	chr5:15690800-15695800	Enhancers	Brain Anterior Caudate	brain
5	chr5:15690800-15696200	Enhancers	Ovary	ovary
6	chr5:15690800-15696400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:15691400-15695200	Weak transcription	Aorta	Aorta
8	chr5:15691800-15695000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:15692600-15695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:15692600-15695800	Enhancers	Brain Hippocampus Middle	brain
11	chr5:15692600-15696200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:15692800-15696000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:15693000-15696400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:15693200-15695200	Weak transcription	Lung	lung
15	chr5:15693200-15695600	Enhancers	Brain Substantia Nigra	brain
16	chr5:15693200-15701000	Enhancers	Fetal Heart	heart
17	chr5:15693400-15696200	Enhancers	Colon Smooth Muscle	Colon
18	chr5:15693400-15696200	Enhancers	Fetal Muscle Leg	muscle
19	chr5:15693600-15695800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr5:15693800-15696000	Enhancers	Fetal Stomach	stomach
21	chr5:15693800-15696400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr5:15694000-15695800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:15694000-15695800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:15694000-15695800	Enhancers	Brain Angular Gyrus	brain
25	chr5:15694000-15696000	Enhancers	Fetal Kidney	kidney
26	chr5:15694000-15696000	Enhancers	Rectal Smooth Muscle	rectum
27	chr5:15694000-15696200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr5:15694200-15695600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr5:15694200-15695600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:15694200-15695600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr5:15694200-15695600	Enhancers	Brain Cingulate Gyrus	brain
32	chr5:15694200-15695600	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr5:15694200-15695800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:15694200-15695800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:15694200-15695800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr5:15694200-15695800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:15694200-15695800	Enhancers	Fetal Intestine Small	intestine
38	chr5:15694200-15696000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:15694200-15696000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr5:15694200-15696000	Enhancers	Adipose Nuclei	Adipose
41	chr5:15694200-15696000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr5:15694200-15696000	Enhancers	Small Intestine	intestine
43	chr5:15694200-15696000	Enhancers	HSMMtube	muscle
44	chr5:15694200-15696200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:15694200-15696200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr5:15694400-15695400	Enhancers	Fetal Lung	lung
47	chr5:15694400-15695400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr5:15694400-15695400	Weak transcription	Psoas Muscle	Psoas
49	chr5:15694400-15695800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr5:15694400-15696200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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