Variant report

Variant	rs16867730
Chromosome Location	chr5:15789739-15789740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1505038	0.84[ASN][1000 genomes]
rs1505039	0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15764200-15796800	Weak transcription	Aorta	Aorta
2	chr5:15784200-15792800	Weak transcription	Ovary	ovary
3	chr5:15785800-15792600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:15786000-15792000	Weak transcription	Brain Angular Gyrus	brain
5	chr5:15786000-15792800	Weak transcription	Spleen	Spleen
6	chr5:15786000-15793800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:15786000-15794200	Weak transcription	Fetal Brain Female	brain
8	chr5:15786200-15789800	Weak transcription	Fetal Heart	heart
9	chr5:15786600-15794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:15787200-15789800	Weak transcription	NHDF-Ad	bronchial
11	chr5:15787400-15794000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:15787600-15790800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:15787600-15791600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:15787600-15791600	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:15787600-15793800	Weak transcription	Adipose Nuclei	Adipose
16	chr5:15787600-15796600	Weak transcription	Right Ventricle	heart
17	chr5:15787800-15789800	Weak transcription	HUVEC	blood vessel
18	chr5:15787800-15791600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:15788200-15789800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:15788200-15794200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:15788400-15790400	Weak transcription	Brain Substantia Nigra	brain
22	chr5:15788600-15789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:15789000-15794000	Weak transcription	Fetal Stomach	stomach
24	chr5:15789200-15790000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:15789400-15790000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:15789400-15790200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:15789400-15791400	Enhancers	Left Ventricle	heart
28	chr5:15789600-15789800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:15789600-15789800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:15789600-15790000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr5:15789600-15790000	Enhancers	Fetal Muscle Trunk	muscle
32	chr5:15789600-15790000	Enhancers	Right Atrium	heart
33	chr5:15789600-15790000	Enhancers	HSMMtube	muscle
34	chr5:15789600-15791600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:15789600-15792600	Enhancers	NH-A	brain

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