Variant report

Variant	rs16867813
Chromosome Location	chr6:27466520-27466521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16897529	1.00[MKK][hapmap]
rs58163963	0.84[AFR][1000 genomes]
rs58505304	0.84[AFR][1000 genomes]
rs60820603	0.84[AFR][1000 genomes]
rs73741743	1.00[AFR][1000 genomes]
rs73741744	1.00[AFR][1000 genomes]
rs73741745	1.00[AFR][1000 genomes]
rs73741749	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27463800-27470200	Weak transcription	Right Atrium	heart
2	chr6:27464000-27468200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:27464000-27469200	Weak transcription	Hela-S3	cervix
4	chr6:27464000-27469400	Weak transcription	HMEC	breast
5	chr6:27464000-27469800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:27464200-27466800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:27464200-27468000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:27464200-27468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:27464200-27468200	Weak transcription	K562	blood
10	chr6:27466200-27470200	Weak transcription	Pancreas	Pancrea
11	chr6:27466400-27466600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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