Variant report

Variant	rs16867834
Chromosome Location	chr8:102584370-102584371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102576519..102579331-chr8:102581793..102585306,3	MCF-7	breast:
2	chr8:102504396..102506932-chr8:102582821..102584601,2	MCF-7	breast:
3	chr8:102524517..102526581-chr8:102582052..102584606,2	MCF-7	breast:
4	chr8:102582322..102584576-chr8:102588630..102591641,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11996495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11996871	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35333368	0.82[ASN][1000 genomes]
rs57874832	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73701931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
3	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102566600-102585600	Weak transcription	Pancreas	Pancrea
3	chr8:102571000-102589600	Weak transcription	Gastric	stomach
4	chr8:102576000-102589600	Weak transcription	HMEC	breast
5	chr8:102580200-102585600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:102582200-102592400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:102583000-102584400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:102583200-102585800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:102583200-102586000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:102583400-102584800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:102583400-102585200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:102583400-102585200	Weak transcription	Colonic Mucosa	Colon
13	chr8:102583400-102585200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:102583400-102585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:102583400-102585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:102583400-102585800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:102583400-102585800	Weak transcription	NHEK	skin
18	chr8:102583400-102586400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:102583400-102586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:102583400-102586800	Weak transcription	Lung	lung
21	chr8:102583400-102588200	Weak transcription	Ovary	ovary
22	chr8:102583600-102585600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:102583600-102585800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:102583800-102584400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:102583800-102596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:102584000-102584400	Strong transcription	Fetal Intestine Small	intestine
27	chr8:102584000-102584400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr8:102584000-102585200	Weak transcription	Placenta	Placenta
29	chr8:102584000-102585600	Weak transcription	A549	lung
30	chr8:102584000-102586200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:102584000-102586200	Enhancers	Hela-S3	cervix
32	chr8:102584000-102586600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:102584200-102585000	Weak transcription	Fetal Intestine Large	intestine
34	chr8:102584200-102585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:102584200-102586000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:102584200-102586600	Weak transcription	Esophagus	oesophagus

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