Variant report

Variant	rs16867848
Chromosome Location	chr8:102590841-102590842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102590095..102591654-chr8:102593333..102595255,2	MCF-7	breast:
2	chr8:102589864..102591664-chr8:102607587..102610544,2	MCF-7	breast:
3	chr8:102504953..102507256-chr8:102590036..102592865,2	MCF-7	breast:
4	chr8:102582322..102584576-chr8:102588630..102591641,3	MCF-7	breast:
5	chr8:102586663..102588864-chr8:102589452..102591832,2	MCF-7	breast:
6	chr8:102588119..102597900-chr8:102614552..102624670,18	MCF-7	breast:
7	chr8:102590604..102593500-chr8:102619061..102620861,2	MCF-7	breast:
8	chr8:102502774..102506723-chr8:102590162..102592891,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10955258	0.81[ASW][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11996495	0.85[JPT][hapmap]
rs11996871	0.85[JPT][hapmap]
rs16867846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102582200-102592400	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:102583800-102596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:102585600-102595800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:102585800-102592200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:102587000-102594600	Weak transcription	Fetal Stomach	stomach
7	chr8:102587000-102597000	Weak transcription	Colonic Mucosa	Colon
8	chr8:102587400-102597000	Weak transcription	Lung	lung
9	chr8:102588400-102594000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:102588600-102595400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:102588800-102595800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:102589000-102591000	Strong transcription	Fetal Intestine Small	intestine
13	chr8:102589000-102595800	Strong transcription	NHEK	skin
14	chr8:102589200-102591200	Enhancers	Colon Smooth Muscle	Colon
15	chr8:102589200-102599400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:102589400-102594000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr8:102589400-102594600	Strong transcription	Placenta	Placenta
18	chr8:102589600-102591000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:102589600-102593000	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr8:102589600-102599800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:102589800-102591200	Strong transcription	Fetal Intestine Large	intestine
22	chr8:102589800-102592000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:102590000-102595600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:102590200-102591200	Enhancers	Adipose Nuclei	Adipose
25	chr8:102590200-102591200	Enhancers	Liver	Liver
26	chr8:102590200-102591200	Enhancers	Fetal Heart	heart
27	chr8:102590200-102591800	Enhancers	Stomach Mucosa	stomach
28	chr8:102590400-102593400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:102590400-102594800	Weak transcription	Pancreas	Pancrea
30	chr8:102590400-102597000	Weak transcription	Fetal Brain Male	brain
31	chr8:102590400-102603400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:102590600-102591800	Weak transcription	Left Ventricle	heart
33	chr8:102590600-102593400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:102590600-102594600	Weak transcription	Esophagus	oesophagus
35	chr8:102590600-102598600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:102590800-102592000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:102590800-102592000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr8:102590800-102593600	Weak transcription	HMEC	breast
41	chr8:102590800-102595400	Weak transcription	Gastric	stomach
42	chr8:102590800-102596000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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