Variant report

Variant	rs16867963
Chromosome Location	chr5:89140664-89140665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73178784	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89123800-89145200	Weak transcription	Aorta	Aorta
2	chr5:89140200-89140800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:89140200-89140800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr5:89140200-89140800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:89140200-89141000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:89140200-89141400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:89140200-89142000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:89140200-89142400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:89140200-89142600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:89140200-89142600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:89140200-89142800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:89140400-89140800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:89140400-89140800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:89140400-89140800	Enhancers	Esophagus	oesophagus
15	chr5:89140400-89142400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:89140600-89143600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:89140600-89145200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:89140600-89145400	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links