Variant report

Variant	rs16868414
Chromosome Location	chr5:89565016-89565017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89564889..89568033-chr5:89575518..89579089,3	MCF-7	breast:
2	chr5:89548610..89551361-chr5:89563315..89565634,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16868382	1.00[AMR][1000 genomes]
rs16868390	1.00[AMR][1000 genomes]
rs16868392	1.00[AMR][1000 genomes]
rs16868393	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868395	0.90[AFR][1000 genomes]
rs16868397	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868407	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868416	0.81[AFR][1000 genomes]
rs2916623	0.84[YRI][hapmap]
rs57348675	1.00[AMR][1000 genomes]
rs59769329	1.00[AMR][1000 genomes]
rs6864615	1.00[AMR][1000 genomes]
rs73184878	1.00[AMR][1000 genomes]
rs73184879	1.00[AMR][1000 genomes]
rs73184884	1.00[AMR][1000 genomes]
rs73184886	1.00[AMR][1000 genomes]
rs73184889	1.00[AMR][1000 genomes]
rs73184891	1.00[AMR][1000 genomes]
rs73184895	1.00[AMR][1000 genomes]
rs73186611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73186614	0.81[AFR][1000 genomes]
rs73186615	0.81[AFR][1000 genomes]
rs73186617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv882362	chr5:89437963-89604380	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv830391	chr5:89456582-89641195	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv830393	chr5:89499644-89658493	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
10	nsv980984	chr5:89563586-89566679	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89561200-89582200	Weak transcription	Aorta	Aorta
2	chr5:89562000-89565400	Weak transcription	Fetal Brain Female	brain
3	chr5:89562200-89565800	Weak transcription	Brain Germinal Matrix	brain
4	chr5:89565000-89566000	Enhancers	Fetal Brain Male	brain

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