Variant report

Variant	rs16868644
Chromosome Location	chr8:102887984-102887985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102503238..102506028-chr8:102887232..102889960,2	MCF-7	breast:
2	chr8:102886318..102888246-chr8:102888335..102890712,2	MCF-7	breast:
3	chr8:102878654..102880299-chr8:102886876..102888668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16868526	0.89[AMR][1000 genomes]
rs56196307	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59458214	0.89[AMR][1000 genomes]
rs73696514	0.89[AMR][1000 genomes]
rs73696517	0.89[AMR][1000 genomes]
rs73696520	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73696527	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73696532	0.89[AMR][1000 genomes]
rs73696633	1.00[AMR][1000 genomes]
rs73696637	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1030076	chr8:102866179-102896458	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102870000-102891200	Weak transcription	Ovary	ovary
2	chr8:102881800-102891000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102882800-102889800	Enhancers	Fetal Muscle Leg	muscle
4	chr8:102883600-102898600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:102884200-102897600	Weak transcription	Left Ventricle	heart
6	chr8:102885400-102900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:102886000-102889600	Weak transcription	Aorta	Aorta
8	chr8:102886600-102888000	Weak transcription	NHDF-Ad	bronchial
9	chr8:102886800-102894000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:102887000-102889000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:102887400-102888200	Active TSS	Brain Cingulate Gyrus	brain
12	chr8:102887400-102888200	Enhancers	Brain Germinal Matrix	brain
13	chr8:102887400-102888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:102887400-102888400	Active TSS	Brain Anterior Caudate	brain
15	chr8:102887400-102888800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:102887400-102889200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:102887600-102888000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:102887600-102888200	Active TSS	Brain Hippocampus Middle	brain
19	chr8:102887600-102888400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr8:102887600-102888400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:102887600-102888400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:102887600-102897600	Weak transcription	Right Atrium	heart
23	chr8:102887800-102888000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:102887800-102888200	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr8:102887800-102888200	Active TSS	Brain Substantia Nigra	brain
26	chr8:102887800-102888600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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