Variant report

Variant	rs16868693
Chromosome Location	chr5:89779608-89779609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:89778206..89780123-chr5:89823874..89826427,2	MCF-7	breast:
2	chr5:89777835..89781277-chr5:89821033..89823702,3	K562	blood:
3	chr5:89767166..89771784-chr5:89772857..89779694,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176018	Chromatin interaction
ENSG00000164199	Chromatin interaction
ENSG00000113356	Chromatin interaction
ENSG00000176055	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16868995	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv518131	chr5:89748142-89781594	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv882364	chr5:89748142-89808531	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv882365	chr5:89770768-89882618	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89771200-89784000	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:89771200-89788600	Weak transcription	Psoas Muscle	Psoas
3	chr5:89771200-89796200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:89771600-89798800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:89771600-89814400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:89772200-89780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:89772200-89784400	Weak transcription	Hela-S3	cervix
8	chr5:89772400-89784600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:89772600-89782200	Weak transcription	A549	lung
10	chr5:89773400-89795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:89773600-89798800	Weak transcription	HMEC	breast
12	chr5:89773800-89816000	Weak transcription	HepG2	liver
13	chr5:89773800-89824400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:89774000-89780000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:89774000-89780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:89774000-89780400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:89774000-89785800	Weak transcription	Adipose Nuclei	Adipose
18	chr5:89774000-89787600	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:89774000-89814600	Weak transcription	Dnd41	blood
20	chr5:89774400-89781000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:89774400-89782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:89774400-89814600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:89775000-89789800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:89775600-89780000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:89775800-89780200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:89775800-89784600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:89776000-89779800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:89776000-89780000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:89776200-89781000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:89776200-89789800	Weak transcription	GM12878-XiMat	blood
31	chr5:89776200-89799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:89776200-89800400	Weak transcription	HUVEC	blood vessel
33	chr5:89776400-89780000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr5:89776400-89784400	Weak transcription	NHDF-Ad	bronchial
35	chr5:89776600-89780200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:89776600-89798800	Weak transcription	NHEK	skin
37	chr5:89776800-89780200	Weak transcription	K562	blood
38	chr5:89776800-89784200	Weak transcription	Osteobl	bone
39	chr5:89776800-89784600	Weak transcription	NHLF	lung
40	chr5:89777000-89806600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:89779000-89779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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