Variant report

Variant	rs16868837
Chromosome Location	chr5:89907473-89907474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89825899..89828736-chr5:89905925..89909224,3	K562	blood:
2	chr5:89903854..89914063-chr5:89934543..89943749,18	K562	blood:
3	chr5:89905824..89907510-chr5:89971831..89974244,2	K562	blood:
4	chr5:89905459..89908312-chr5:89909982..89911482,2	MCF-7	breast:
5	chr5:89703094..89705140-chr5:89905646..89907768,2	K562	blood:
6	chr5:89904971..89912478-chr5:89936195..89941599,10	K562	blood:
7	chr5:89904239..89908604-chr5:89932898..89936068,3	K562	blood:
8	chr5:89902314..89904389-chr5:89906199..89907994,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16868836	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16868853	0.83[AFR][1000 genomes]
rs16868861	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16868876	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16868881	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16868939	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16869019	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1878880	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs56926055	0.83[AFR][1000 genomes]
rs58724654	0.81[AFR][1000 genomes]
rs59458274	1.00[AFR][1000 genomes]
rs73179766	0.83[AFR][1000 genomes]
rs73179768	0.83[AFR][1000 genomes]
rs73179771	0.86[AFR][1000 genomes]
rs7713007	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7731348	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7732809	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89892800-89909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:89893000-89907800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:89901000-89908200	Weak transcription	GM12878-XiMat	blood
4	chr5:89902600-89917400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:89903200-89908400	Weak transcription	K562	blood
6	chr5:89906400-89908600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:89906400-89908600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:89907000-89908000	Enhancers	Brain Germinal Matrix	brain
9	chr5:89907000-89908600	Enhancers	Fetal Brain Male	brain
10	chr5:89907000-89909000	Weak transcription	Fetal Brain Female	brain
11	chr5:89907400-89908400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:89907400-89911000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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