Variant report

Variant	rs16868879
Chromosome Location	chr8:103026224-103026225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1348026	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17414527	1.00[MKK][hapmap]
rs2212794	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103010200-103028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103010400-103027200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:103010800-103028400	Weak transcription	Aorta	Aorta
4	chr8:103022200-103027000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:103022400-103028600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:103023000-103028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:103023200-103027800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:103024800-103028200	Weak transcription	Pancreas	Pancrea
9	chr8:103024800-103028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:103025000-103026600	Enhancers	Fetal Heart	heart
11	chr8:103025000-103027800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:103025200-103026400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:103025400-103026400	Enhancers	Left Ventricle	heart
14	chr8:103025600-103026600	Enhancers	Right Atrium	heart
15	chr8:103025800-103028200	Weak transcription	Ovary	ovary
16	chr8:103026000-103028000	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:103026000-103028400	Weak transcription	Primary T cells from cord blood	blood
18	chr8:103026200-103026400	Enhancers	Right Ventricle	heart
19	chr8:103026200-103028600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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