Variant report

Variant	rs16868887
Chromosome Location	chr5:89930149-89930150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89924678..89927128-chr5:89929071..89931303,2	K562	blood:
2	chr5:89908014..89909686-chr5:89928163..89930208,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10037078	1.00[TSI][hapmap]
rs10514335	0.82[ASW][hapmap]
rs16868636	1.00[EUR][1000 genomes]
rs16868773	1.00[EUR][1000 genomes]
rs16868780	1.00[EUR][1000 genomes]
rs16868793	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16868831	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16868956	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16868998	1.00[EUR][1000 genomes]
rs16869002	1.00[EUR][1000 genomes]
rs16869055	1.00[EUR][1000 genomes]
rs16869104	1.00[EUR][1000 genomes]
rs2139192	1.00[TSI][hapmap]
rs6452889	1.00[EUR][1000 genomes]
rs7721819	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89918000-89950600	Weak transcription	Pancreas	Pancrea
2	chr5:89919600-89936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:89925200-89936400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:89925400-89936200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:89925400-89938600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:89925600-89931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:89927000-89930400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:89927600-89931000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:89927600-89931200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:89928800-89930200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:89928800-89940000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:89928800-89941000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:89929000-89933400	Weak transcription	K562	blood
14	chr5:89929000-89935800	Weak transcription	Brain Germinal Matrix	brain
15	chr5:89929000-89936400	Weak transcription	Fetal Brain Female	brain
16	chr5:89929000-89936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:89929000-89940400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:89929000-89948600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:89929200-89931200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:89929600-89931200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:89929800-89930600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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