Variant report
| Variant | rs16869030 |
|---|---|
| Chromosome Location | chr4:20001967-20001968 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10049865 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10050116 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16869049 | 0.95[ASN][1000 genomes] |
| rs16869087 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16869090 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28409675 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28431016 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28478164 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28516762 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28520312 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28535850 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28563041 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28662935 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28819396 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6842753 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73240171 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73241930 | 0.95[ASN][1000 genomes] |
| rs73241936 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73241938 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73241949 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73241950 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73241954 | 0.95[ASN][1000 genomes] |
| rs73241960 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2752044 | chr4:19788263-20126804 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005430 | chr4:19932874-20013705 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1004033 | chr4:19986986-20043516 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:20001400-20002000 | Enhancers | Fetal Lung | lung |
| 2 | chr4:20001600-20006800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
