Variant report

Variant	rs16869040
Chromosome Location	chr6:33280503-33280504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33167013..33169892-chr6:33280381..33282720,3	MCF-7	breast:
2	chr6:33238090..33243099-chr6:33279379..33286881,12	MCF-7	breast:
3	chr6:33278991..33280553-chr6:33357781..33360462,2	MCF-7	breast:
4	chr6:33280452..33282497-chr6:33377188..33378997,2	MCF-7	breast:
5	chr6:26198160..26200179-chr6:33280182..33281976,2	MCF-7	breast:
6	chr6:32937349..32940364-chr6:33280292..33282198,3	MCF-7	breast:
7	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:
8	chr6:33247489..33248030-chr6:33280167..33280902,2	MCF-7	breast:
9	chr6:33215997..33218425-chr6:33280174..33283199,3	K562	blood:
10	chr6:32936236..32938607-chr6:33279588..33282413,3	MCF-7	breast:
11	chr6:33279220..33282454-chr6:33357653..33360404,5	MCF-7	breast:
12	chr6:33163462..33166749-chr6:33279583..33282083,3	K562	blood:
13	chr6:33256218..33259091-chr6:33279064..33284854,6	MCF-7	breast:
14	chr17:7382482..7385239-chr6:33280198..33282715,2	MCF-7	breast:
15	chr6:33279097..33283546-chr6:33386045..33390564,5	MCF-7	breast:
16	chr6:33243260..33246626-chr6:33279357..33283682,8	MCF-7	breast:
17	chr6:33279489..33293095-chr6:33375317..33398824,56	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112473	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000259224	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000232940	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204231	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000202441	Chromatin interaction
ENSG00000227057	Chromatin interaction
ENSG00000174282	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000112511	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1801823	1.00[AMR][1000 genomes]
rs6457722	1.00[AMR][1000 genomes]
rs6924701	1.00[AMR][1000 genomes]
rs7754193	1.00[AMR][1000 genomes]
rs7755161	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33279400-33280600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr6:33279600-33280600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:33279600-33280600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:33279600-33280600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
5	chr6:33279600-33280600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:33279600-33280600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
7	chr6:33279600-33280600	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr6:33279600-33280600	Flanking Active TSS	K562	blood
9	chr6:33279600-33280600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:33279600-33280800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:33279600-33282400	Active TSS	NHDF-Ad	bronchial
12	chr6:33279800-33280600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:33279800-33280600	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
14	chr6:33279800-33280600	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
15	chr6:33279800-33280600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:33279800-33280600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:33279800-33280600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:33279800-33280600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:33279800-33280600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr6:33279800-33280600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:33279800-33280600	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr6:33279800-33280600	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr6:33279800-33280600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr6:33279800-33280600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:33279800-33280600	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr6:33279800-33280600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
27	chr6:33279800-33280600	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
28	chr6:33279800-33280600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:33279800-33280600	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr6:33279800-33280600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr6:33279800-33280600	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr6:33279800-33280600	Flanking Active TSS	HUVEC	blood vessel
33	chr6:33279800-33280600	Flanking Active TSS	Osteobl	bone
34	chr6:33279800-33280800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr6:33279800-33280800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:33279800-33280800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:33279800-33280800	Flanking Active TSS	Liver	Liver
38	chr6:33279800-33281200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:33279800-33281200	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr6:33279800-33281400	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr6:33279800-33281400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr6:33279800-33281400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr6:33279800-33282400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:33279800-33282600	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:33279800-33282600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:33279800-33282800	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:33279800-33283000	Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr6:33279800-33283200	Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:33280000-33280600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:33280000-33280600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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